Package index
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BNLearnScorer()
- BNLearnScorer
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CalculateAcceptanceRates()
- Calculate acceptance rates
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CalculateEdgeProbabilities()
- Calculate pairwise edge probabilities
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CalculateFeatureMean()
- Calculate arithmetic mean for a DAG feature
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CollectUniqueObjects()
- Collect unique objects
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CreateScorer()
- Scorer constructor
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DAGtoCPDAG()
- Convert DAG to CPDAG
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DAGtoPartition()
- Convert DAG to partition
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DefaultProposal()
- Default proposal constructor
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FlattenChains()
- Flatten chains
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GetEmptyDAG()
- Get an empty DAG given a set of nodes.
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GetIncrementalScoringEdges()
- Get incremental edges
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GetLowestPairwiseScoringEdges()
- Preprocessing for blacklisting Get the lowest pairwise scoring edges.
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GetMAP()
- Get the maximum a posteriori state
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MutilateGraph()
- Mutilate graph
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PartitionMCMC()
- Transition objects. Partition MCMC
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PartitiontoDAG()
- Sample DAG from partition
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PlotConcordance()
- Concordance plot
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PlotCumulativeMeanTrace()
- Plot cumulative mean trace plot.
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PlotScoreTrace()
- Plot the score trace
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PostProcessChains()
- Index chains for further analysis
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SampleChains()
- Sample chains
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SampleEdgeProbabilities()
- Sample edge probabilities
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SamplePosteriorPredictiveChains()
- Draw from a posterior predictive distribution
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ScoreDAG()
- Score DAG.
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ScoreLabelledPartition()
- Score labelled partition
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UniformlySampleDAG()
- Uniformly sample DAG
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`[`(<cia_chain>)
- Index a cia_chain object
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`[`(<cia_chains>)
- Index a cia_chains object
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`[`(<cia_post_chain>)
- Indexing with respect to iterations.
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`[`(<cia_post_chains>)
- Index a cia_post_chains object with respect to iterations.
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`[[`(<cia_chains>)
- Index a cia_chains object
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`[[`(<cia_post_chains>)
- Index a cia_post_chains object.
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toBNLearn()
- Convert to bnlearn object.
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toMatrix()
- Convert to adjacency matrix.
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togRain()
- Convert to a gRain object.